MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene rnmV (MPN072)
Name 
rnmV
Stable ID 
MPN072
Location 
86410 - 86946 -
Sequence 
    1  ATGGATAAAA AAACACGTCT AAAACTAGAT GGGGTGATAG TGTGTGAGGG CAAAACTGAC
   61  CAAGCCCGCT TACAACAGCT GTTTGATGTT AGTGTTATTA CCACGAACGG TTCAGCTTTA
  121  AACCAAAGAA CCATTAACCT GATTAAGGCT GTAGCTAAAA AACAACCGGT GATCCTCTTC
  181  TTGGACCCCG ATGTTGCTGG TCAGAAAATT CGCCGGCAGT TAGAACAACA CTTAGATAAG
  241  TATGAAAGTT GTTTTATAGC TCGGAAAGAC ATGAAACCCA ACAGCACTAA AATTGGGGTA
  301  GCGGAAGCAA CTGATGCAGC TTTAATCCAA GCGTTACAAC AACGTCAGGT GTTCACTAAA
  361  ACAACCCAAC CCACTTTAAG CTGGGAACAA TATTTGGAAT TAAACCTCAA CAGTAAAAGT
  421  AAACGGTTAG CGTTGTGTAA CAAACTACAC TTAAGCTACT TTAACCACAA GCAGCTCTTT
  481  CGCAAACTTA ATTTACTCCA ACTTACCTTT GACCAAGTAT GCCAGCTCTT AAAGTAA
Download Sequence
Operon 
OP563
Operon location 
86485 - 88480
Protein (mpn072)
Name 
Ribonuclease M5 (EC 3.1.26.8)
Stable ID 
Mpn072
Molecular Weight 
19580
Isoelectric Point 
10
Localization 
Cytoplasm
Comment Before, yabF. Endonucleolytic cleavage of RNA, removing 21 and 42 nucleotides, respectively, from the 5'- and 3'-termini of a 5S-rRNA precursor
Sequence 
MDKKTRLKLDGVIVCEGKTDQARLQQLFDVSVITTNGSALNQRTINLIKAVAKKQPVILFLDPDVAGQKIRRQLEQHLDK
YESCFIARKDMKPNSTKIGVAEATDAALIQALQQRQVFTKTTQPTLSWEQYLELNLNSKSKRLALCNKLHLSYFNHKQLF
RKLNLLQLTFDQVCQLLK
Post translational modifications
No post translational modifications were found
GENE/PROTEIN rnmV (Domains Overview)
Click on the features to jump to domain info

 ExportIMG
Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
6-125 SSF110455 (n.a.) NULL 4.2e-29
7-78 G3DSA:3.40.1360.10 (n.a.) NULL 0.000000016
8-178 TIGR00334 (IPR004466) Primase-related protein 0
10-83 SM00493 (IPR006171) Toprim domain 0.0000000000000025
12-85 PF01751 (IPR006171) Toprim domain 0.00000000052
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
8 177 169 - MCAP_0003 Mycoplasma capricolum subsp. capricolum 3 175 5e-28 35.1955 288
6 177 171 - MYCGA5740 Mycoplasma gallisepticum 13 183 1e-38 44.186 379
1 178 177 - MG057 Mycoplasma genitalium 1 178 <1e-50 60.1124 463
8 177 169 - MSC_0003 Mycoplasma mycoides subsp. mycoides SC 3 175 2e-27 35.1955 282
12 177 165 - MYPE9440 Mycoplasma penetrans 13 176 7.00649e-43 46.988 417
12 178 166 - Lactococcus lactis subsp. lactis KF147 10 204 8e-20 28.934 220
7 168 161 - Bacillus subtilis subsp. subtilis 1 167 3e-17 29.9401 201
7 168 161 - Bacillus subtilis subsp. subtilis 1 167 3e-17 29.9401 201
External IDs
Alias 
yabF
COG 
COG1658L
EC number 
3.1.26.8
Gene ID 
877159
GI 
13507811
GO 
Translation, ribosomal structure and biogenesis
Home COG 
J
InterPro 
IPR006154|Toprim subdomain
InterPro 
IPR004466|Primase-related protein
InterPro 
IPR006171|TOPRIM
Old MP number 
MP083
Pathway 
DNA repair and maintenance
PDB homologs 
1dd9_A
PDB homologs 
1dde_A
PDB homologs 
1eqn_A
Pfam 
PF00473
PID 
g1673737
RefSeq 
NP_109760.1
Swiss-Prot protein ID 
Y072_MYCPN
phylomeDB tree 
Y072_MYCPN
UniProt 
P75045
Transcription
IMAGE BROWSERS

OPERON OP563 (Genomic Overview)
Region:86485-88480

Click on the features to jump to a different MyMpn page

 ExportIMG MyGBrowser GBrowse
STRING image

STRING of Mpn072STRING legend

PDB image(s)

1dd9

PDB 1dd9

1dde

PDB 1dde

1eqn

PDB 1eqn
Site hosted by:
Copyright 2010-16, Luis Serrano group. All rights reserved.
All data provided for download in the MyMpn database is free to use. Upon doing so, please cite the original data source and the MyMpn database
CONTACT US